show: z_scr f_dme sw_cvr seq_id asize rmsd q_scr Info align
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chain z_scr

z-score

a z-score based on sampling 100 alternative random alignments		 f_dme

"fraction of distance matrix elements"

Calculate a Cα based distance matrix for the query protein and related structure. Calculate the root rmsd of these distance matrices. Sort the matrix entries in order of difference between the structures, to find the distance which is most different between the structures. Remove this distance and recalculate the rmsd of distance matrices. Keep removing elements from the calculation until the rmsd is less than 4 Å. Return the fraction of the distance matrices which was kept. Similar structures will have a high f_dme. Values more than about 0.8 are usually obviously similar proteins. Values less than 0.7 are very borderline.		 sw_cvr

coverage

how much of the input structure is aligned to the structure from the protein databank.		 seq_id

sequence identity

between query and library structures.		 asize

alignment size

number of residues aligned to residues, so gaps do not count here.		 rmsd

RMSD

root mean square difference of Cartesisan coordinates calculatd by the method of Diamond.		 q_scr

quality score

f_dme times the alignment coverage sw_cvr.		 Info

Info

information from rcsb.org

multiple structure alignment

choose structures to align and submit.
3bpzA 54.8 1 0.98 24 119 3.33 0.9754 PDB
3u0zA 55.9 1 0.98 24 119 3.57 0.9754 PDB
4myiA 59.9 1 0.98 27 119 2.68 0.9754 PDB
2ptmA 54.2 1 0.98 24 119 3.40 0.9754 PDB
3idbB 59.7 1 0.98 26 119 2.47 0.9754 PDB
3pnaA 58.5 1 0.98 28 119 3.44 0.9754 PDB
2qvsB 60.7 1 0.98 27 119 2.69 0.9754 PDB
3uknA 58.6 0.997 0.98 24 119 4.00 0.9722 PDB
4l11A 43.1 1 0.97 19 118 3.61 0.9672 PDB
4lloA 57.3 1 0.97 25 118 2.94 0.9672 PDB
2z69A 58.2 1 0.96 19 117 3.65 0.9590 PDB
3ocpA 62.1 1 0.96 27 117 2.69 0.9590 PDB
3cf6E 62.5 1 0.96 26 117 3.48 0.9590 PDB
4muvA 53.5 1 0.95 29 116 3.81 0.9508 PDB
4qx5A 62.4 1 0.94 99 115 2.48 0.9426 PDB
1zybA 51.8 0.968 0.96 17 117 3.96 0.9285 PDB
3fx3A 63.3 1 0.93 19 113 2.21 0.9262 PDB
2d93A 55.7 1 0.92 19 112 2.58 0.9180 PDB
2pqqA 66.7 1 0.92 22 112 2.01 0.9180 PDB
3r6sA 62.8 1 0.90 23 110 2.26 0.9016 PDB
3d0sA 61.2 0.982 0.91 26 111 3.78 0.8937 PDB
3dn7A 53.5 1 0.89 12 109 3.64 0.8934 PDB
3e97A 54.3 1 0.89 27 109 3.36 0.8934 PDB
3of1A 62 0.896 0.99 31 121 3.82 0.8885 PDB
3mdpA 64.7 1 0.89 21 108 2.48 0.8852 PDB
2gauA 63.9 1 0.88 19 107 3.14 0.8770 PDB
4ollA 55.2 0.897 0.98 31 119 3.96 0.8745 PDB
4avaA 59.5 0.964 0.90 27 110 3.98 0.8692 PDB
3dv8A 57.7 1 0.87 14 106 3.53 0.8689 PDB
1wgpA 61.6 1 0.86 22 105 2.34 0.8607 PDB
3iwzA 63.4 1 0.81 18 99 2.99 0.8115 PDB
4kg1A 57 1 0.80 24 97 3.05 0.7951 PDB
4ev0A 62 1 0.80 29 97 2.08 0.7951 PDB
2xkoA 64 1 0.79 17 96 3.84 0.7869 PDB
2oz6A 60.6 1 0.79 30 96 2.86 0.7869 PDB
4hzfA 64.5 1 0.78 28 95 2.77 0.7787 PDB
4rfaA 41.6 0.917 0.84 17 103 3.92 0.7743 PDB
3la7A 56.1 0.953 0.80 17 98 3.97 0.7658 PDB
2fmyA 55 1 0.76 19 93 3.91 0.7623 PDB
1ft9A 52.5 0.986 0.77 16 94 3.84 0.7596 PDB
2bgcA 43.2 0.983 0.77 14 94 3.81 0.7571 PDB
4la2A 46.2 0.885 0.85 9 104 3.99 0.7547 PDB
1o5lA 55.8 1 0.75 18 92 2.64 0.7541 PDB
2h6cA 55.5 1 0.74 14 90 3.61 0.7377 PDB
4b29A 42 0.849 0.84 11 103 3.97 0.7165 PDB
3purA 41.5 0.742 0.96 7 117 3.99 0.7114 PDB
3e6cC 52 1 0.70 13 86 3.31 0.7049 PDB
3nw4A 32.1 0.763 0.91 13 111 3.99 0.6942 PDB
4qxbA 51.8 0.722 0.96 9 117 3.95 0.6921 PDB
4i2oA 50.2 1 0.67 17 82 2.11 0.6721 PDB
4cswA 41.5 0.802 0.84 14 102 3.97 0.6705 PDB
2d40A 28.2 0.731 0.91 5 111 3.94 0.6650 PDB
3b02A 53.6 0.957 0.69 23 84 3.77 0.6587 PDB
2zcwA 47.3 0.944 0.70 28 85 3.82 0.6579 PDB
1o5uA 33.3 0.997 0.66 21 80 3.87 0.6539 PDB
2i45A 21.7 0.863 0.75 9 92 3.99 0.6509 PDB
3d82A 34.5 0.85 0.75 16 92 3.98 0.6410 PDB
3kv9A 49.1 0.671 0.95 5 116 4.00 0.6376 PDB
3ussA 31.6 0.708 0.89 11 109 3.98 0.6322 PDB
1lr5A 36.1 0.807 0.78 8 95 3.93 0.6284 PDB
4ieuA 44.7 0.743 0.84 11 103 3.97 0.6271 PDB
4lt5A 38.2 0.627 1.00 7 122 3.96 0.6270 PDB
3fjsA 31.8 0.886 0.70 19 85 4.00 0.6175 PDB
3bu7A 31 0.65 0.93 9 114 3.91 0.6076 PDB
1juhA 29.8 0.778 0.78 15 95 3.96 0.6062 PDB
3k2oA 44.7 0.636 0.95 7 116 3.96 0.6048 PDB
4qm9A 41.4 0.735 0.82 3 100 3.97 0.6027 PDB
2oxcA 29.9 0.614 0.98 10 119 5.26 0.5985 PDB
4qkdA 36.9 0.664 0.89 12 109 3.89 0.5937 PDB
1cauB 43.6 0.812 0.73 17 89 3.97 0.5922 PDB
1s4cA 40.4 0.714 0.83 10 101 3.94 0.5915 PDB
3itqA 36.7 0.656 0.90 8 110 3.99 0.5914 PDB
1gp6A 29.3 0.6 0.98 8 120 4.19 0.5898 PDB
3zxhA 19.4 0.603 0.98 4 119 6.08 0.5882 PDB
3kt7A 38.2 0.648 0.90 6 110 3.97 0.5846 PDB
2p5bA 45.7 0.623 0.93 5 114 3.93 0.5823 PDB
1j3qA 30.2 0.602 0.97 8 118 3.96 0.5823 PDB
2x31A 20.8 0.595 0.98 4 119 6.69 0.5800 PDB
4lukA 29.2 0.599 0.97 10 118 3.86 0.5795 PDB
3kscA 41.9 0.791 0.73 9 89 3.97 0.5771 PDB
4cckA 35.7 0.597 0.97 8 118 3.95 0.5770 PDB
4lxlA 45.5 0.638 0.90 5 110 3.96 0.5750 PDB
4cn9A 20.7 0.58 0.98 8 120 5.23 0.5701 PDB
3ct5A 13.3 0.588 0.97 2 118 4.11 0.5690 PDB
4cclA 34.9 0.641 0.89 13 108 3.98 0.5675 PDB
3dxtA 44.9 0.623 0.91 6 111 3.88 0.5672 PDB
1c1kA 17.3 0.573 0.98 6 120 4.62 0.5639 PDB
1vrbA 35.9 0.602 0.93 9 114 4.00 0.5625 PDB
1x7oA 20.8 0.567 0.99 7 121 6.24 0.5620 PDB
1gpjA 18.1 0.562 1.00 8 122 5.89 0.5620 PDB
4bxfA 38.5 0.59 0.95 7 116 3.97 0.5614 PDB
2pytA 28 0.964 0.58 7 71 3.98 0.5611 PDB
4bqyA 26.2 0.59 0.95 9 116 4.60 0.5609 PDB
1uijA 45.7 0.594 0.94 15 115 3.93 0.5603 PDB
3lifA 17.3 0.584 0.96 11 117 5.69 0.5601 PDB
2yikA 14.8 0.569 0.98 4 120 6.45 0.5599 PDB
3l2hA 49.4 0.65 0.86 11 105 3.90 0.5597 PDB
3bcwA 23.3 0.973 0.57 11 70 3.91 0.5583 PDB
1qdeA 25.2 0.597 0.93 8 114 5.36 0.5578 PDB
3rnsA 34.4 0.971 0.57 13 70 3.90 0.5574 PDB