SALAMI: Structure ALignment And Match InquiryOur new Salami Page is finally online!
There are still adjustments to be done, but we will keep the old page available as long as not everything is running. We are glad for any feedback, so feel free to write us: salami@zbh.uni-hamburg.de 
Welcome to our Salami-Server Page.Submit coordinates to the server, and wait for email with a reference to a web page with detailed results. Our server will take your query structure, compare it to a representative list (pdb90) of about 30000 structures and find those which are similar. The web page with results has several options for sorting and ranking the hits. Depending on the size of your query structure and the load on our cluster, the search could take from 2 to 60 minutes. Typically, a search takes 10 to 15 minutes. Feel free to put this server through its paces, and let us know what you think. Feedback in the form of bug reports, feature requests and general comments is very welcome and should be directed to salami@zbh.uni-hamburg.de For testing purposes, you can simply submit an example like 1cdk chain A with the default parameters. Alternatively, you can just look at results of this example query. You can download the pairwise alignment code here (for linux) or here (for windows) And if you have something to say mail wurstl@zbh.uni-hamburg.de |